C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 39 (metal ion transporter), member 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106633 Slc39a11-004 ENSMUSG00000041654 10090 - 11:113244853-113565759 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000106633
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000106633 2.738±1.00 3.377±1.13 1.109±0.00 3.984±2.06 3.462±1.27 6.967±1.25 0.353±0.06 2.659±0.81 2.674±1.22 0.263±0.09 2.848±0.98 2.738±0.21 2.693±1.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096Z CIL_00096Z_0002 VISTA 11:112713161-113315514
CIL_00067E CIL_00067E_0002 CGP 11:112782224-113650079
CIL_00067F CIL_00067F_0002 CGP 11:113244853-113650079

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0006829 IEA zinc ion transport
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0046873 IEA metal ion transmembrane transporter activity
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255559 SLC39A11-001 protein_coding Homo_sapiens 0 1147
ENST00000542342 SLC39A11-002 protein_coding Homo_sapiens 0 1256
ENST00000578620 SLC39A11-004 protein_coding Homo_sapiens 1e-25 121
ENST00000579018 SLC39A11-005 protein_coding Homo_sapiens 5.00264e-43 178
ENST00000579491 SLC39A11-011 processed_transcript Homo_sapiens 0 233
ENST00000579732 SLC39A11-012 protein_coding Homo_sapiens 0 599
ENST00000579988 SLC39A11-017 processed_transcript Homo_sapiens 0 457
ENST00000580557 SLC39A11-003 protein_coding Homo_sapiens 0 497
ENST00000581005 SLC39A11-009 processed_transcript Homo_sapiens 0 303
ENST00000582179 SLC39A11-008 retained_intron Homo_sapiens 0 326
ENST00000582769 SLC39A11-016 protein_coding Homo_sapiens 0 497
ENST00000583146 SLC39A11-007 protein_coding Homo_sapiens 0 547
ENST00000584129 SLC39A11-010 nonsense_mediated_decay Homo_sapiens 1e-31 141

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