C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: clathrin, light chain A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000464497 CLTA-008 ENSG00000122705 9606 + 9:36190931-36304781 nonsense_mediated_decay

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006K2 CIL_0006K2_0001 CGP 9:36169394-36304781
CIL_0006K3 CIL_0006K3_0001 CGP 9:36190856-36304781

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0006886 IEA intracellular protein transport
GO:0016192 IEA vesicle-mediated transport
GO:0030130 IEA clathrin coat of trans-Golgi network vesicle
GO:0030132 IEA clathrin coat of coated pit
GO:0043231 IDA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170241 Clta-201 protein_coding Mus_musculus 0 684
ENSMUST00000107846 Clta-001 protein_coding Mus_musculus 0 684
ENSMUST00000107851 Clta-003 protein_coding Mus_musculus 0 680
ENSMUST00000107849 Clta-002 protein_coding Mus_musculus 0 680
ENSMUST00000107847 Clta-005 protein_coding Mus_musculus 0 680
ENSMUST00000107845 Clta-004 protein_coding Mus_musculus 0 636
ENSMUST00000168162 Pdgfra-202 protein_coding Mus_musculus 0.00003 55
ENSMUST00000000476 Pdgfra-201 protein_coding Mus_musculus 0.00003 55

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