C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: MDS1 and EVI1 complex locus
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108270 Mecom-009 ENSMUSG00000027684 10090 - 3:29951306-30013505 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderKidneyLiverLungPlacentaTestisENSMUST00000108270
Transcript ID Adipose Adrenal Bladder Kidney Liver Lung Placenta Testis
ENSMUST00000108270 0.602±0.00 0.190±0.07 2.223±0.00 0.901±0.00 0.145±0.09 0.994±0.00 0.169±0.00 0.062±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000711 CIL_000711_0002 CGP 3:29082023-30548008
CIL_0008SS CIL_0008SS_0002 VISTA 3:29679822-30280970
CIL_000921 CIL_000921_0002 VISTA 3:29804532-30409280
CIL_0007J8 CIL_0007J8_0002 UCNEbase 3:29834894-30452898
CIL_0001ZH CIL_0001ZH_0002 CGP 3:29951299-30599939

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000118 ISS histone deacetylase complex
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006915 IEA apoptotic process
GO:0016607 ISS nuclear speck
GO:0030154 IEA cell differentiation
GO:0042803 ISS protein homodimerization activity
GO:0043069 ISS negative regulation of programmed cell death
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0046329 ISS negative regulation of JNK cascade
GO:0046872 IEA metal ion binding
GO:0051726 ISS regulation of cell cycle
GO:0071425 IMP hematopoietic stem cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264674 MECOM-201 protein_coding Homo_sapiens 0 5806
ENST00000433243 MECOM-016 protein_coding Homo_sapiens 0 4399
ENST00000460814 MECOM-017 protein_coding Homo_sapiens 0 4084
ENST00000460890 MECOM-011 protein_coding Homo_sapiens 0 560
ENST00000461430 MECOM-014 retained_intron Homo_sapiens 0 385
ENST00000464456 MECOM-020 protein_coding Homo_sapiens 0 6693
ENST00000468789 MECOM-018 protein_coding Homo_sapiens 0 4558
ENST00000472280 MECOM-019 protein_coding Homo_sapiens 0 4549
ENST00000475754 MECOM-008 protein_coding Homo_sapiens 0 219
ENST00000481315 MECOM-007 protein_coding Homo_sapiens 0 355
ENST00000484519 MECOM-012 protein_coding Homo_sapiens 0 680
ENST00000487503 MECOM-010 protein_coding Homo_sapiens 0 560
ENST00000492586 MECOM-015 protein_coding Homo_sapiens 0 645
ENST00000494292 MECOM-004 protein_coding Homo_sapiens 0 4680
ENST00000494597 MECOM-009 protein_coding Homo_sapiens 0 560

Loading