C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SLP adaptor and CSK interacting membrane protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108534 Scimp-001 ENSMUSG00000057135 10090 - 11:70790932-70812586 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000108534
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000108534 0.647±0.36 1.029±0.16 0.479±0.15 0.015±0.00 2.757±0.55 0.532±0.23 0.231±0.17 0.906±0.25 0.607±0.39 1.747±0.36 0.274±0.00 0.540±0.27 0.111±0.05 0.071±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00020X CIL_00020X_0002 CGP 11:70790932-70943105

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001772 ISS immunological synapse
GO:0005515 IPI protein binding
GO:0016020 ISS membrane
GO:0016021 IEA integral component of membrane
GO:0031256 ISS leading edge membrane
GO:0031259 ISS uropod membrane
GO:0070374 IMP positive regulation of ERK1 and ERK2 cascade
GO:0097197 ISS tetraspanin-enriched microdomain

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000399600 SCIMP-003 protein_coding Homo_sapiens 3e-38 163
ENST00000571800 SCIMP-002 protein_coding Homo_sapiens 2e-23 115
ENST00000574081 SCIMP-001 protein_coding Homo_sapiens 0 272
ENST00000574297 SCIMP-004 protein_coding Homo_sapiens 0 224

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