C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RIKEN cDNA 0610010K14 gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108578 0610010K14Rik-003 ENSMUSG00000020831 10090 - 11:70235206-70237914 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartLiverLungOvaryPlacentaENSMUST00000108578
Transcript ID Bladder Brain Breast Colon Heart Liver Lung Ovary Placenta
ENSMUST00000108578 10.173±2.08 22.378±4.78 17.946±3.81 12.138±4.85 8.112±0.00 13.296±5.06 12.317±2.10 15.084±1.23 15.013±1.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006SP CIL_0006SP_0003 CGP 11:70235206-70239830

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0008150 ND biological_process
GO:0016568 IEA chromatin modification
GO:0016589 ISS NURF complex
GO:0071339 ISS MLL1 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000439424 C17orf49-001 protein_coding Homo_sapiens 0 990
ENST00000546495 C17orf49-006 protein_coding Homo_sapiens 0 929
ENST00000546760 C17orf49-003 protein_coding Homo_sapiens 0 641
ENST00000547302 RNASEK-C17orf49-004 protein_coding Homo_sapiens 0 822
ENST00000547709 C17orf49-009 processed_transcript Homo_sapiens 0 213
ENST00000547747 C17orf49-007 nonsense_mediated_decay Homo_sapiens 0 379
ENST00000547863 RNASEK-C17orf49-002 retained_intron Homo_sapiens 0 1020
ENST00000549775 RNASEK-C17orf49-001 retained_intron Homo_sapiens 0 889
ENST00000549857 C17orf49-002 retained_intron Homo_sapiens 0 379
ENST00000550038 C17orf49-008 processed_transcript Homo_sapiens 0 315
ENST00000552402 C17orf49-004 protein_coding Homo_sapiens 0 588
ENST00000552775 C17orf49-005 protein_coding Homo_sapiens 0 870

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