C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 36 (proton/amino acid symporter), member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108872 Slc36a1-001 ENSMUSG00000020261 10090 + 11:55204350-55236330 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000108872
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000108872 6.047±2.04 6.424±0.85 7.063±0.35 5.908±0.89 5.785±2.93 22.290±1.44 2.820±0.69 22.893±1.60 8.283±2.20 6.523±1.06 1.173±0.37 4.760±1.54 6.879±2.92 2.208±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001KX CIL_0001KX_0002 CGP 11:55158470-55236330
CIL_0001UB CIL_0001UB_0002 CGP 11:55204350-55336564

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005280 IDA hydrogen:amino acid symporter activity
GO:0005764 ISA lysosome
GO:0005765 IEA lysosomal membrane
GO:0005783 IEA endoplasmic reticulum
GO:0005886 IEA plasma membrane
GO:0015078 IEA hydrogen ion transmembrane transporter activity
GO:0015180 IDA L-alanine transmembrane transporter activity
GO:0015187 IDA glycine transmembrane transporter activity
GO:0015193 IDA L-proline transmembrane transporter activity
GO:0015804 IEA neutral amino acid transport
GO:0015808 IDA L-alanine transport
GO:0015816 IDA glycine transport
GO:0015824 IDA proline transport
GO:0015992 IDA proton transport
GO:0016021 IEA integral component of membrane
GO:0035524 IDA proline transmembrane transport
GO:1902600 IEA hydrogen ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000243389 SLC36A1-001 protein_coding Homo_sapiens 0 1555
ENST00000335230 SLC36A3-001 protein_coding Homo_sapiens 0 427
ENST00000335244 SLC36A2-001 protein_coding Homo_sapiens 0 780
ENST00000377713 SLC36A3-002 protein_coding Homo_sapiens 0 355
ENST00000423071 SLC36A3-003 retained_intron Homo_sapiens 0 355
ENST00000429484 SLC36A1-004 protein_coding Homo_sapiens 0 767
ENST00000517628 SLC36A1-003 protein_coding Homo_sapiens 0 466
ENST00000518280 SLC36A2-006 nonsense_mediated_decay Homo_sapiens 0 538
ENST00000518617 SLC36A2-002 nonsense_mediated_decay Homo_sapiens 0 300
ENST00000520111 SLC36A1-008 protein_coding Homo_sapiens 0 300
ENST00000520701 SLC36A1-007 protein_coding Homo_sapiens 0 1554
ENST00000521351 SLC36A1-011 processed_transcript Homo_sapiens 0 274
ENST00000521925 SLC36A1-002 protein_coding Homo_sapiens 0 1234
ENST00000521967 SLC36A2-004 protein_coding Homo_sapiens 0 606
ENST00000522185 SLC36A1-012 nonsense_mediated_decay Homo_sapiens 0 449
ENST00000616007 SLC36A1-201 protein_coding Homo_sapiens 0 1232

Loading