C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 36 (proton/amino acid symporter), member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000243389 SLC36A1-001 ENSG00000123643 9606 + 5:151447596-151492381 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000243389
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000243389 2.533±0.00 2.073±0.00 0.525±0.00 0.684±0.00 1.215±0.50 3.126±0.00 1.058±0.00 1.575±1.21 0.885±0.00 0.792±0.16 0.799±0.00 1.524±0.63 2.257±0.17 1.827±0.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001KX CIL_0001KX_0001 CGP 5:151314978-151492381
CIL_0001UB CIL_0001UB_0001 CGP 5:151437046-151568944

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005280 IEA hydrogen:amino acid symporter activity
GO:0005764 IEA lysosome
GO:0005765 IDA lysosomal membrane
GO:0005783 IDA endoplasmic reticulum
GO:0005886 TAS plasma membrane
GO:0006811 TAS ion transport
GO:0006865 TAS amino acid transport
GO:0015078 IEA hydrogen ion transmembrane transporter activity
GO:0015180 IEA L-alanine transmembrane transporter activity
GO:0015187 IEA glycine transmembrane transporter activity
GO:0015193 IEA L-proline transmembrane transporter activity
GO:0015293 IEA symporter activity
GO:0015804 IEA neutral amino acid transport
GO:0015808 IEA L-alanine transport
GO:0015816 IEA glycine transport
GO:0015824 IEA proline transport
GO:0015992 IEA proton transport
GO:0016021 IEA integral component of membrane
GO:0035524 IEA proline transmembrane transport
GO:0055085 TAS transmembrane transport
GO:1902600 IEA hydrogen ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108872 Slc36a1-001 protein_coding Mus_musculus 0 1555
ENSMUST00000108867 Slc36a1-002 protein_coding Mus_musculus 0 1533
ENSMUST00000020499 Slc36a1-201 protein_coding Mus_musculus 0 1528
ENSMUST00000039305 Slc36a2-001 protein_coding Mus_musculus 0 841
ENSMUST00000147506 Slc36a1-003 protein_coding Mus_musculus 0 507
ENSMUST00000020502 Slc36a3-001 protein_coding Mus_musculus 0 442
ENSMUST00000128244 Slc36a3-003 nonsense_mediated_decay Mus_musculus 0 403

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