C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TNFAIP3 interacting protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108886 Tnip1-002 ENSMUSG00000020400 10090 - 11:54910787-54962916 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000108886
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000108886 3.302±1.83 6.122±2.36 1.928±0.16 1.035±0.22 6.776±2.90 10.399±3.92 3.866±1.08 4.223±0.70 0.748±0.25 3.729±0.48 2.696±0.00 14.301±6.69 7.462±5.72 0.478±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001KS CIL_0001KS_0002 CGP 11:54902453-54962917
CIL_0001KR CIL_0001KR_0002 CGP 11:54910785-55033445

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002755 IDA MyD88-dependent toll-like receptor signaling pathway
GO:0004843 ISS ubiquitin-specific protease activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0006954 IEA inflammatory response
GO:0007159 ISS leukocyte cell-cell adhesion
GO:0008152 ISS metabolic process
GO:0031593 IDA polyubiquitin binding
GO:0043124 ISS negative regulation of I-kappaB kinase/NF-kappaB signaling
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0050729 IMP positive regulation of inflammatory response
GO:0051019 ISS mitogen-activated protein kinase binding
GO:0070373 ISS negative regulation of ERK1 and ERK2 cascade

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000315050 TNIP1-002 protein_coding Homo_sapiens 0 1711
ENST00000389378 TNIP1-201 protein_coding Homo_sapiens 0 1639
ENST00000518977 TNIP1-005 protein_coding Homo_sapiens 0 1585
ENST00000519339 TNIP1-009 nonsense_mediated_decay Homo_sapiens 0 1299
ENST00000520931 TNIP1-006 protein_coding Homo_sapiens 0 1711
ENST00000521591 TNIP1-004 protein_coding Homo_sapiens 0 1683
ENST00000521782 TNIP1-016 retained_intron Homo_sapiens 0 191
ENST00000522100 TNIP1-010 protein_coding Homo_sapiens 0 512
ENST00000522226 TNIP1-001 protein_coding Homo_sapiens 0 1683
ENST00000523200 TNIP1-007 protein_coding Homo_sapiens 0 1297
ENST00000523338 TNIP1-003 protein_coding Homo_sapiens 0 1585
ENST00000524280 TNIP1-008 protein_coding Homo_sapiens 0 1297
ENST00000610535 TNIP1-202 protein_coding Homo_sapiens 0 1297
ENST00000610874 TNIP1-203 protein_coding Homo_sapiens 0 1297

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