C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium channel, voltage-dependent, beta 3 subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109150 Cacnb3-202 ENSMUSG00000003352 10090 + 15:98632220-98644530 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109150
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109150 13.741±13.23 4.450±2.41 29.070±2.36 84.307±1.51 32.036±12.51 32.001±10.40 0.430±0.16 4.458±2.57 0.280±0.06 8.069±4.05 0.663±0.18 30.505±13.62 2.705±0.53 0.350±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003DH CIL_0003DH_0003 CGP 15:98589994-98644530
CIL_0003DO CIL_0003DO_0003 CGP 15:98632220-98662889

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005891 IDA voltage-gated calcium channel complex
GO:0008331 TAS high voltage-gated calcium channel activity
GO:0050852 IMP T cell receptor signaling pathway
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000301050 CACNB3-001 protein_coding Homo_sapiens 0 2351
ENST00000536187 CACNB3-004 protein_coding Homo_sapiens 0 2503
ENST00000540990 CACNB3-002 protein_coding Homo_sapiens 0 2314
ENST00000547230 CACNB3-018 protein_coding Homo_sapiens 0 1954
ENST00000547392 CACNB3-006 protein_coding Homo_sapiens 0 1495
ENST00000547693 CACNB3-020 retained_intron Homo_sapiens 0 405
ENST00000547818 CACNB3-015 protein_coding Homo_sapiens 0 1206
ENST00000548279 CACNB3-017 protein_coding Homo_sapiens 0 621
ENST00000548860 CACNB3-005 retained_intron Homo_sapiens 0 1631
ENST00000548874 CACNB3-009 nonsense_mediated_decay Homo_sapiens 0 584
ENST00000549226 CACNB3-003 retained_intron Homo_sapiens 0 695
ENST00000549971 CACNB3-014 processed_transcript Homo_sapiens 0 494
ENST00000550064 CACNB3-024 protein_coding Homo_sapiens 0 1029
ENST00000550168 CACNB3-011 processed_transcript Homo_sapiens 0 691
ENST00000550190 CACNB3-022 protein_coding Homo_sapiens 0 237
ENST00000550391 CACNB3-008 nonsense_mediated_decay Homo_sapiens 0 905
ENST00000550483 CACNB3-023 nonsense_mediated_decay Homo_sapiens 0 623
ENST00000550771 CACNB3-016 retained_intron Homo_sapiens 0 401
ENST00000551544 CACNB3-019 nonsense_mediated_decay Homo_sapiens 0 2350
ENST00000551716 CACNB3-010 retained_intron Homo_sapiens 0 573
ENST00000552022 CACNB3-013 processed_transcript Homo_sapiens 0 689
ENST00000552465 CACNB3-012 retained_intron Homo_sapiens 1e-39 167
ENST00000552480 CACNB3-021 retained_intron Homo_sapiens 0 865

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