C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor coactivator 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372004 NCOA3-001 ENSG00000124151 9606 + 20:47501902-47656877 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000372004
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000372004 10.023±0.00 3.215±0.00 4.861±0.00 4.829±1.84 3.397±2.03 2.454±0.00 3.205±1.21 5.260±1.18 6.149±0.00 5.252±0.90 7.021±3.65 4.989±1.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NW CIL_0008NW_0001 VISTA 20:47083832-47684912
CIL_0006IW CIL_0006IW_0002 CGP 20:47209214-47656877
CIL_0001Y0 CIL_0001Y0_0001 CGP 20:47501902-47786616

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003713 NAS:IEA transcription coactivator activity
GO:0004402 IDA histone acetyltransferase activity
GO:0004871 IEA signal transducer activity
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007165 IEA signal transduction
GO:0010628 IMP positive regulation of gene expression
GO:0016573 IEA histone acetylation
GO:0016922 IPI ligand-dependent nuclear receptor binding
GO:0030374 IEA ligand-dependent nuclear receptor transcription coactivator activity
GO:0030521 NAS androgen receptor signaling pathway
GO:0035257 IDA:IEA nuclear hormone receptor binding
GO:0035624 TAS receptor transactivation
GO:0045618 IMP positive regulation of keratinocyte differentiation
GO:0045893 NAS positive regulation of transcription, DNA-templated
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0046966 NAS thyroid hormone receptor binding
GO:0046983 IEA protein dimerization activity
GO:0047485 IPI protein N-terminus binding
GO:0050681 NAS androgen receptor binding
GO:2001141 IMP regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000088095 Ncoa3-201 protein_coding Mus_musculus 0 2732
ENSMUST00000109252 Ncoa3-001 protein_coding Mus_musculus 0 2732
ENSMUST00000153507 Ncoa3-002 processed_transcript Mus_musculus 0 551
ENSMUST00000139658 Ncoa3-003 retained_intron Mus_musculus 0 429

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