Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Accession	Transcript Name	Contained in Gene	Tax ID	Strand	Position	Biotype
Transcript Info
Description:	clathrin interactor 1
ENSMUST00000109260	Clint1-002	ENSMUSG00000006169	10090	+	11:45852051-45910625	protein_coding

Expression Patterns

Transcript ID	Adipose	Adrenal	Bladder	Brain	Breast	Colon	Heart	Kidney	Liver	Lung	Muscle	Ovary	Placenta	Testis
ENSMUST00000109260	22.977±5.79	22.760±7.16	26.261±2.06	14.512±2.09	20.681±2.31	50.165±3.40	9.245±3.53	27.782±2.18	24.443±10.79	23.076±3.41	8.047±0.76	34.944±8.34	43.763±11.48	16.113±5.32

Conserved Regions
Region ID	Sub-Region	Region Type	Position
CIL_0005AQ	CIL_0005AQ_0002	CGP	11:44617317-45910625
CIL_0007N2	CIL_0007N2_0002	UCNEbase	11:44634884-45922375
CIL_00053M	CIL_00053M_0002	CGP	11:45852051-45944935

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0005515	IEA	protein binding
GO:0005634	IEA	nucleus
GO:0005794	IEA	Golgi apparatus
GO:0016020	IEA	membrane
GO:0030136	IEA	clathrin-coated vesicle
GO:0030276	IEA	clathrin binding
GO:0043231	IEA	intracellular membrane-bounded organelle
GO:0048268	IEA	clathrin coat assembly

Homologs
ENSEMBL Accession	Gene Name	Biotype	Species	E-Value	Bit Score
ENST00000411809	CLINT1-001	protein_coding	Homo_sapiens	0	3256
ENST00000518855	CLINT1-004	retained_intron	Homo_sapiens	0	1869
ENST00000521047	CLINT1-007	nonsense_mediated_decay	Homo_sapiens	0	649
ENST00000521615	CLINT1-006	protein_coding	Homo_sapiens	0	283
ENST00000522381	CLINT1-008	protein_coding	Homo_sapiens	0	501
ENST00000523094	CLINT1-003	protein_coding	Homo_sapiens	0	1698
ENST00000523908	CLINT1-002	protein_coding	Homo_sapiens	0	1832
ENST00000524306	CLINT1-005	retained_intron	Homo_sapiens	0	1432
ENST00000530302	CLINT1-009	retained_intron	Homo_sapiens	0	721
ENST00000530742	CLINT1-010	protein_coding	Homo_sapiens	0	1698

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