C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: 2-oxoglutarate and iron-dependent oxygenase domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000566157 OGFOD1-001 ENSG00000087263 9606 + 16:56451490-56479100 protein_coding

Homo sapiens EnsemblGRCh38

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverOvaryPlacentaENST00000566157
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Ovary Placenta
ENST00000566157 2.882±0.00 5.367±0.00 4.276±1.43 2.282±1.05 1.711±0.33 0.786±0.00 1.552±0.00 2.810±1.24 2.280±0.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00048T CIL_00048T_0001 CGP 16:56361452-56452199
CIL_00048W CIL_00048W_0001 CGP 16:56429133-56479100
CIL_00048V CIL_00048V_0001 CGP 16:56451490-56520283

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005506 IEA iron ion binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006449 IMP regulation of translational termination
GO:0008283 IMP cell proliferation
GO:0010494 IMP cytoplasmic stress granule
GO:0016705 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016706 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0018126 IDA protein hydroxylation
GO:0019511 IDA peptidyl-proline hydroxylation
GO:0031418 IEA L-ascorbic acid binding
GO:0031543 IDA peptidyl-proline dioxygenase activity
GO:0031544 IDA peptidyl-proline 3-dioxygenase activity
GO:0034063 IMP stress granule assembly
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109556 Ogfod1-001 protein_coding Mus_musculus 0 1594
ENSMUST00000060632 Ogfod1-004 protein_coding Mus_musculus 0 1557
ENSMUST00000127634 Ogfod1-005 processed_transcript Mus_musculus 0 747
ENSMUST00000093301 Ogfod1-002 protein_coding Mus_musculus 0 726
ENSMUST00000172674 Ogfod1-007 processed_transcript Mus_musculus 0 686
ENSMUST00000145717 Ogfod1-006 retained_intron Mus_musculus 0 496
ENSMUST00000141636 Ogfod1-003 retained_intron Mus_musculus 0 316
ENSMUST00000189018 Ccdc86-003 retained_intron Mus_musculus 6e-16 92
ENSMUST00000057256 6030458C11Rik-201 protein_coding Mus_musculus 0.0000000000001 84
ENSMUST00000169308 0610011F06Rik-006 protein_coding Mus_musculus 0.00000000002 77
ENSMUST00000110456 0610011F06Rik-005 nonsense_mediated_decay Mus_musculus 0.00000000002 77
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.00008 55

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