C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: 2-oxoglutarate and iron-dependent oxygenase domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000336111 OGFOD1-002 ENSG00000087263 9606 + 16:56451524-56477129 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000336111
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000336111 6.820±0.00 7.258±0.00 2.064±0.00 11.523±0.00 8.008±0.00 5.345±0.00 2.295±0.00 1.267±0.00 2.963±0.00 3.924±0.00 6.329±2.28 5.512±1.49 12.844±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00048T CIL_00048T_0001 CGP 16:56361452-56452199
CIL_00048W CIL_00048W_0001 CGP 16:56429133-56479100
CIL_00048V CIL_00048V_0001 CGP 16:56451490-56520283

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000060632 Ogfod1-004 protein_coding Mus_musculus 0 1277
ENSMUST00000109556 Ogfod1-001 protein_coding Mus_musculus 0 1277
ENSMUST00000127634 Ogfod1-005 processed_transcript Mus_musculus 0 745
ENSMUST00000093301 Ogfod1-002 protein_coding Mus_musculus 0 726
ENSMUST00000145717 Ogfod1-006 retained_intron Mus_musculus 0 496
ENSMUST00000172674 Ogfod1-007 processed_transcript Mus_musculus 0 396
ENSMUST00000141636 Ogfod1-003 retained_intron Mus_musculus 2e-28 132
ENSMUST00000189018 Ccdc86-003 retained_intron Mus_musculus 3e-16 92
ENSMUST00000057256 6030458C11Rik-201 protein_coding Mus_musculus 0.00000000000006 84
ENSMUST00000169308 0610011F06Rik-006 protein_coding Mus_musculus 0.000000000009 77
ENSMUST00000110456 0610011F06Rik-005 nonsense_mediated_decay Mus_musculus 0.000000000009 77
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.00004 55

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