C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cordon-bleu WH2 repeat
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109650 Cobl-003 ENSMUSG00000020173 10090 - 11:12236676-12464859 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverOvaryPlacentaTestisENSMUST00000109650
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Ovary Placenta Testis
ENSMUST00000109650 0.141±0.00 0.686±0.00 2.624±2.38 0.590±0.34 0.986±0.10 0.126±0.01 1.148±0.28 0.344±0.27 1.048±0.55 0.834±0.67 0.324±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KL CIL_0008KL_0002 VISTA 11:11661856-12262621
CIL_00072I CIL_00072I_0003 CGP 11:11930508-12464960

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000578 IEP embryonic axis specification
GO:0001726 IDA ruffle
GO:0001757 IEP somite specification
GO:0001843 IGI neural tube closure
GO:0001889 IEP liver development
GO:0003785 IDA actin monomer binding
GO:0005515 IPI protein binding
GO:0005884 IDA actin filament
GO:0005886 IEA plasma membrane
GO:0005938 IDA cell cortex
GO:0016020 IDA membrane
GO:0030041 IMP actin filament polymerization
GO:0030424 IDA axon
GO:0030425 IDA dendrite
GO:0030903 IEP notochord development
GO:0033504 IEP floor plate development
GO:0043025 IDA neuronal cell body
GO:0044294 IDA dendritic growth cone
GO:0044295 IDA axonal growth cone
GO:0048471 IDA perinuclear region of cytoplasm
GO:0048565 IEP digestive tract development
GO:0048669 IMP collateral sprouting in absence of injury
GO:0051639 IDA actin filament network formation
GO:0051764 NAS actin crosslink formation
GO:1900006 IDA positive regulation of dendrite development
GO:1900029 IDA positive regulation of ruffle assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265136 COBL-001 protein_coding Homo_sapiens 0 1393
ENST00000395540 COBL-006 protein_coding Homo_sapiens 0 1086
ENST00000395542 COBL-201 protein_coding Homo_sapiens 0 1086
ENST00000431948 COBL-003 protein_coding Homo_sapiens 0 553
ENST00000441453 COBL-005 protein_coding Homo_sapiens 0 1068
ENST00000443421 RP13-347D8.1-001 processed_pseudogene Homo_sapiens 0 774
ENST00000445054 COBL-002 protein_coding Homo_sapiens 0 429
ENST00000452534 COBL-004 protein_coding Homo_sapiens 0 859
ENST00000462395 COBL-007 retained_intron Homo_sapiens 0 475

Loading