C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NOL1/NOP2/Sun domain family member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109699 Nsun2-001 ENSMUSG00000021595 10090 + 13:69612016-69634334 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109699
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109699 10.575±5.18 23.111±0.57 16.208±1.08 11.303±1.56 6.545±2.40 6.747±2.07 24.773±16.70 8.416±1.20 9.364±1.68 30.201±3.55 33.205±14.84 31.283±10.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001EG CIL_0001EG_0002 CGP 13:68620043-69533839
CIL_00048P CIL_00048P_0002 CGP 13:69533746-69635780

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000049 IEA tRNA binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0007067 IEA mitotic nuclear division
GO:0016428 IEA tRNA (cytosine-5-)-methyltransferase activity
GO:0030488 IEA tRNA methylation
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264670 NSUN2-001 protein_coding Homo_sapiens 0 2211
ENST00000502932 NSUN2-009 retained_intron Homo_sapiens 0 263
ENST00000504374 NSUN2-005 nonsense_mediated_decay Homo_sapiens 0 1598
ENST00000505264 NSUN2-007 processed_transcript Homo_sapiens 0 235
ENST00000505892 NSUN2-003 retained_intron Homo_sapiens 0 1602
ENST00000506139 NSUN2-004 protein_coding Homo_sapiens 0 1849
ENST00000507888 NSUN2-008 retained_intron Homo_sapiens 0 298
ENST00000513888 NSUN2-002 retained_intron Homo_sapiens 0 512
ENST00000514127 NSUN2-006 nonsense_mediated_decay Homo_sapiens 0 508

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