C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAD23a homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109761 Rad23a-001 ENSMUSG00000003813 10090 - 8:84834911-84840665 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109761
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109761 9.141±1.39 11.202±0.36 7.980±4.49 11.819±2.51 11.068±4.26 6.105±2.19 13.226±2.03 21.698±13.88 8.240±1.19 38.434±5.24 11.460±0.65 11.519±3.12 10.909±3.99

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZV CIL_0007ZV_0002 VISTA 8:84428902-85032705
CIL_0007VV CIL_0007VV_0002 VISTA 8:84441926-85045230

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000502 IEA proteasome complex
GO:0003684 IEA damaged DNA binding
GO:0005634 IEA nucleus
GO:0006289 IEA nucleotide-excision repair
GO:0006974 IGI cellular response to DNA damage stimulus
GO:0043161 IEA proteasome-mediated ubiquitin-dependent protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000316856 RAD23A-001 protein_coding Homo_sapiens 0 1716
ENST00000316939 GADD45GIP1-001 protein_coding Homo_sapiens 0 363
ENST00000586375 RAD23A-010 nonsense_mediated_decay Homo_sapiens 0 649
ENST00000586534 RAD23A-002 protein_coding Homo_sapiens 0 1744
ENST00000588329 RAD23A-006 retained_intron Homo_sapiens 0 832
ENST00000588826 RAD23A-007 processed_transcript Homo_sapiens 0 878
ENST00000590881 RAD23A-008 protein_coding Homo_sapiens 0 424
ENST00000591499 RAD23A-003 nonsense_mediated_decay Homo_sapiens 0 828
ENST00000592268 RAD23A-005 protein_coding Homo_sapiens 0 1051
ENST00000593114 RAD23A-004 nonsense_mediated_decay Homo_sapiens 0 1572

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