C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane emp24 protein transport domain containing 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109905 Tmed9-201 ENSMUSG00000058569 10090 + 13:55593135-55597663 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109905
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109905 50.882±8.80 44.258±3.75 76.495±7.33 40.962±3.48 25.178±7.99 44.258±4.69 31.481±1.19 41.104±4.29 40.477±13.27 40.878±2.10 28.133±4.13 56.514±11.54 92.130±22.60 16.786±5.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008A2 CIL_0008A2_0002 VISTA 13:55104361-55707564
CIL_0009AP CIL_0009AP_0002 VISTA 13:55516415-56118354
CIL_0002YQ CIL_0002YQ_0002 CGP 13:55539319-55597663
CIL_000387 CIL_000387_0002 CGP 13:55593135-55610443

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 IEA Golgi membrane
GO:0005515 IEA protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005793 IEA endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 IEA Golgi apparatus
GO:0007030 ISS Golgi organization
GO:0010638 ISS positive regulation of organelle organization
GO:0015031 IEA protein transport
GO:0016021 IEA integral component of membrane
GO:0019905 IEA syntaxin binding
GO:0048205 ISS COPI coating of Golgi vesicle
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000332598 TMED9-001 protein_coding Homo_sapiens 0 878
ENST00000505521 TMED9-003 retained_intron Homo_sapiens 0 333
ENST00000507578 TMED9-005 processed_transcript Homo_sapiens 8e-26 119
ENST00000507723 TMED9-002 retained_intron Homo_sapiens 0 466
ENST00000510499 TMED9-006 retained_intron Homo_sapiens 0 525
ENST00000513799 TMED9-004 retained_intron Homo_sapiens 0 706

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