C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB3A, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110093 Rab3a-004 ENSMUSG00000031840 10090 + 8:70754679-70758677 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000110093
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000110093 4.355±0.00 15.853±0.00 4.459±0.60 55.781±27.24 4.969±1.36 8.819±0.30 1.972±0.41 5.536±0.30 4.834±1.18 2.878±0.72 2.346±0.00 1.347±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006BA CIL_0006BA_0002 CGP 8:70723720-70758677

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001669 IDA acrosomal vesicle
GO:0003016 IMP respiratory system process
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0007005 IMP mitochondrion organization
GO:0007264 IEA small GTPase mediated signal transduction
GO:0007274 IMP neuromuscular synaptic transmission
GO:0007409 IMP axonogenesis
GO:0008021 IDA synaptic vesicle
GO:0009791 IMP post-embryonic development
GO:0015031 IEA protein transport
GO:0016079 IMP:ISS synaptic vesicle exocytosis
GO:0016188 IMP synaptic vesicle maturation
GO:0017157 IDA regulation of exocytosis
GO:0030324 IMP lung development
GO:0030424 ISS axon
GO:0031630 IMP regulation of synaptic vesicle fusion to presynaptic membrane
GO:0036465 ISS synaptic vesicle recycling
GO:0043195 IDA terminal bouton
GO:0048172 IMP regulation of short-term neuronal synaptic plasticity
GO:0048489 TAS synaptic vesicle transport
GO:0048790 IMP maintenance of presynaptic active zone structure
GO:0050975 IMP sensory perception of touch
GO:0051602 IMP response to electrical stimulus
GO:1900271 TAS regulation of long-term synaptic potentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000132687 rab3c-001 protein_coding Danio_rerio 0 381
ENST00000222120 RAB3D-001 protein_coding Homo_sapiens 0 462
ENST00000222256 RAB3A-001 protein_coding Homo_sapiens 0 843
ENST00000282878 RAB3C-001 protein_coding Homo_sapiens 0 361
ENST00000381158 RAB3C-004 processed_transcript Homo_sapiens 1e-35 154
ENST00000464076 RAB3A-002 protein_coding Homo_sapiens 0.000000000006 77
ENST00000481914 RAB3A-003 protein_coding Homo_sapiens 0 457
ENST00000515410 RAB3A-004 retained_intron Homo_sapiens 0 305
ENST00000589655 RAB3D-002 protein_coding Homo_sapiens 0 462

Loading