C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: numb gene homolog (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110298 Numb-007 ENSMUSG00000021224 10090 - 12:83794036-83876810 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000110298
Transcript ID Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000110298 3.975±0.00 2.624±0.31 4.615±0.26 3.913±1.13 2.634±0.91 6.884±0.22 5.929±0.00 7.653±1.29 1.954±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008P0 CIL_0008P0_0002 VISTA 12:83418739-84022790
CIL_0001TR CIL_0001TR_0002 CGP 12:83763634-83921934

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005769 IDA early endosome
GO:0007399 IMP nervous system development
GO:0007405 IGI neuroblast proliferation
GO:0007409 IDA axonogenesis
GO:0008013 IPI beta-catenin binding
GO:0016323 IDA basolateral plasma membrane
GO:0019897 IDA extrinsic component of plasma membrane
GO:0030862 IMP positive regulation of polarized epithelial cell differentiation
GO:0030900 IMP forebrain development
GO:0034332 IGI adherens junction organization
GO:0045177 IDA apical part of cell
GO:0045294 IPI alpha-catenin binding
GO:0045296 IPI cadherin binding
GO:0045746 IMP negative regulation of Notch signaling pathway
GO:0060487 IMP lung epithelial cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355058 NUMB-201 protein_coding Homo_sapiens 0 2784
ENST00000356296 NUMB-006 protein_coding Homo_sapiens 0 1583
ENST00000359560 NUMB-202 protein_coding Homo_sapiens 0 2784
ENST00000535282 NUMB-203 protein_coding Homo_sapiens 0 1583
ENST00000544991 NUMB-204 protein_coding Homo_sapiens 0 1583
ENST00000553997 NUMB-024 processed_transcript Homo_sapiens 0 728
ENST00000554014 NUMB-023 retained_intron Homo_sapiens 0 525
ENST00000554315 NUMB-005 retained_intron Homo_sapiens 0 488
ENST00000554394 NUMB-032 protein_coding Homo_sapiens 0 606
ENST00000554521 NUMB-011 protein_coding Homo_sapiens 0 859
ENST00000554546 NUMB-001 protein_coding Homo_sapiens 0 1600
ENST00000554818 NUMB-021 protein_coding Homo_sapiens 0 294
ENST00000555238 NUMB-004 protein_coding Homo_sapiens 0 2784
ENST00000555307 NUMB-022 protein_coding Homo_sapiens 0 606
ENST00000555394 NUMB-002 protein_coding Homo_sapiens 0 1347
ENST00000555738 NUMB-013 protein_coding Homo_sapiens 0 859
ENST00000555859 NUMB-027 protein_coding Homo_sapiens 0 704
ENST00000555987 NUMB-026 protein_coding Homo_sapiens 0 294
ENST00000556112 NUMB-028 retained_intron Homo_sapiens 9.80909e-45 183
ENST00000556772 NUMB-007 protein_coding Homo_sapiens 0 2784
ENST00000556989 NUMB-008 retained_intron Homo_sapiens 0 488
ENST00000557486 NUMB-025 retained_intron Homo_sapiens 0 612
ENST00000557597 NUMB-003 protein_coding Homo_sapiens 0 2784
ENST00000557774 NUMB-020 retained_intron Homo_sapiens 0 294
ENST00000559312 NUMB-010 protein_coding Homo_sapiens 0 859
ENST00000560335 NUMB-012 protein_coding Homo_sapiens 0 859

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