C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110486 Pds5b-002 ENSMUSG00000034021 10090 + 5:150756303-150797424 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastOvaryPlacentaTestisENSMUST00000110486
Transcript ID Adipose Adrenal Breast Ovary Placenta Testis
ENSMUST00000110486 0.760±0.00 0.962±0.00 0.908±0.00 1.466±0.00 0.861±0.00 1.294±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006FL CIL_0006FL_0002 CGP 5:150608007-150810690
CIL_0000UY CIL_0000UY_0002 CGP 5:150673739-150993809

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0005634 ISS nucleus
GO:0007064 ISS mitotic sister chromatid cohesion
GO:0008285 ISS negative regulation of cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000087246 pds5b-201 protein_coding Danio_rerio 0 983
ENSDART00000154435 pds5b-001 protein_coding Danio_rerio 0 983
ENST00000315596 PDS5B-006 protein_coding Homo_sapiens 0 2721
ENST00000447833 PDS5B-012 protein_coding Homo_sapiens 0 649
ENST00000450460 PDS5B-007 nonsense_mediated_decay Homo_sapiens 0 2721
ENST00000481616 PDS5B-004 retained_intron Homo_sapiens 0 440

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