C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, gamma complex associated protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000564079 TUBGCP4-002 ENSG00000137822 9606 + 15:43371115-43409771 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalLungENST00000564079
Transcript ID Adrenal Lung
ENST00000564079 1.468±0.00 1.108±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005YG CIL_0005YG_0001 CGP 15:43330674-43371025
CIL_0005YH CIL_0005YH_0001 CGP 15:43358172-43409771
CIL_0005YA CIL_0005YA_0001 CGP 15:43369221-43510728

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000226 IEA microtubule cytoskeleton organization
GO:0000278 TAS mitotic cell cycle
GO:0000922 IEA spindle pole
GO:0005200 NAS structural constituent of cytoskeleton
GO:0005813 IDA centrosome
GO:0005815 IEA microtubule organizing center
GO:0005829 TAS cytosol
GO:0005874 IEA microtubule
GO:0006461 NAS protein complex assembly
GO:0007020 NAS microtubule nucleation
GO:0008274 NAS gamma-tubulin ring complex
GO:0015630 TAS microtubule cytoskeleton
GO:0016020 IDA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000186659 Tubgcp4-201 protein_coding Mus_musculus 0 2678
ENSMUST00000138601 Tubgcp4-003 retained_intron Mus_musculus 0 2678
ENSMUST00000110658 Tubgcp4-002 protein_coding Mus_musculus 0 2678
ENSMUST00000144076 Tubgcp4-004 retained_intron Mus_musculus 0 2663
ENSMUST00000039541 Tubgcp4-001 protein_coding Mus_musculus 0 2663
ENSMUST00000110657 Tubgcp4-006 protein_coding Mus_musculus 0 2272
ENSMUST00000143305 Tubgcp4-007 retained_intron Mus_musculus 0 1365
ENSMUST00000154633 Tubgcp4-005 retained_intron Mus_musculus 0 1186
ENSDART00000009649 tubgcp4-201 protein_coding Danio_rerio 0 998
ENSMUST00000144123 Tubgcp4-008 processed_transcript Mus_musculus 0 917
ENSMUST00000154318 Tubgcp4-014 retained_intron Mus_musculus 0 782
ENSMUST00000110648 Trp53bp1-001 protein_coding Mus_musculus 0 736
ENSMUST00000110647 Trp53bp1-002 protein_coding Mus_musculus 0 736
ENSMUST00000135555 Tubgcp4-010 processed_transcript Mus_musculus 0 628
ENSMUST00000147540 Trp53bp1-007 nonsense_mediated_decay Mus_musculus 0 569
ENSMUST00000133773 Tubgcp4-009 processed_transcript Mus_musculus 0 547
ENSMUST00000130929 Tubgcp4-011 processed_transcript Mus_musculus 0 501
ENSMUST00000126817 Tubgcp4-013 retained_intron Mus_musculus 0 412
ENSMUST00000143320 Tubgcp4-012 retained_intron Mus_musculus 0 320
ENSMUST00000135890 Trp53bp1-006 processed_transcript Mus_musculus 0 289
ENSMUST00000147554 Trp53bp1-016 processed_transcript Mus_musculus 0 250
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.0000002 64
ENSMUST00000024742 Nfkbie-201 protein_coding Mus_musculus 0.0000007 62

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