C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAN, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000111343 Ran-002 ENSMUSG00000029430 10090 + 5:129020272-129024323 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLiverOvaryTestisENSMUST00000111343
Transcript ID Adrenal Breast Colon Liver Ovary Testis
ENSMUST00000111343 6.975±1.43 5.778±0.43 4.372±0.63 3.596±0.51 7.346±1.05 39.109±6.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000430 CIL_000430_0002 CGP 5:128984557-129024323
CIL_00042Z CIL_00042Z_0002 CGP 5:129020069-129204599

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000055 IEA ribosomal large subunit export from nucleus
GO:0000056 IEA ribosomal small subunit export from nucleus
GO:0000785 IEA chromatin
GO:0003924 IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006184 IEA GTP catabolic process
GO:0006606 IDA protein import into nucleus
GO:0006611 IEA protein export from nucleus
GO:0007067 IEA mitotic nuclear division
GO:0007264 IEA small GTPase mediated signal transduction
GO:0007286 IEA spermatid development
GO:0019003 IEA GDP binding
GO:0019904 IEA protein domain specific binding
GO:0030036 IMP actin cytoskeleton organization
GO:0032092 IEA positive regulation of protein binding
GO:0034613 IMP cellular protein localization
GO:0034629 IMP cellular protein complex localization
GO:0043234 IEA protein complex
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000392367 RAN-005 protein_coding Homo_sapiens 0 671
ENST00000392369 RAN-003 protein_coding Homo_sapiens 0 1267
ENST00000411454 RANP1-001 processed_pseudogene Homo_sapiens 0 749
ENST00000413361 RANP4-001 processed_pseudogene Homo_sapiens 0 529
ENST00000413691 RANP6-001 processed_pseudogene Homo_sapiens 0 658
ENST00000414129 RANP1-001 processed_pseudogene Homo_sapiens 0 754
ENST00000420270 RANP1-001 processed_pseudogene Homo_sapiens 0 754
ENST00000427731 RANP5-001 processed_pseudogene Homo_sapiens 0 499
ENST00000444720 RANP8-001 processed_pseudogene Homo_sapiens 0 490
ENST00000445266 RANP1-001 processed_pseudogene Homo_sapiens 0 749
ENST00000445316 RANP1-001 processed_pseudogene Homo_sapiens 0 754
ENST00000448750 RAN-004 protein_coding Homo_sapiens 0 1238
ENST00000455094 RANP1-001 processed_pseudogene Homo_sapiens 0 754
ENST00000456833 RANP2-001 processed_pseudogene Homo_sapiens 0 278
ENST00000464211 RAN-011 retained_intron Homo_sapiens 0 612
ENST00000477395 RAN-002 retained_intron Homo_sapiens 0 564
ENST00000530970 RANP3-001 processed_pseudogene Homo_sapiens 0 274
ENST00000535090 RAN-010 protein_coding Homo_sapiens 0 723
ENST00000536606 RAN-009 nonsense_mediated_decay Homo_sapiens 0 592
ENST00000539498 RAN-006 retained_intron Homo_sapiens 0 348
ENST00000541630 RAN-008 protein_coding Homo_sapiens 0 1186
ENST00000541679 RAN-012 protein_coding Homo_sapiens 0 584
ENST00000543796 RAN-001 protein_coding Homo_sapiens 0 1290

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