C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: aryl hydrocarbon receptor nuclear translocator-like 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000111639 Arntl2-001 ENSMUSG00000040187 10090 + 6:146796065-146833529 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000111639
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000111639 0.594±0.30 0.306±0.02 3.747±0.72 0.319±0.06 0.513±0.18 0.254±0.12 0.133±0.07 0.131±0.05 0.222±0.12 0.238±0.00 0.629±0.15 0.162±0.00 0.133±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056J CIL_00056J_0002 CGP 6:146724995-146833529
CIL_00056I CIL_00056I_0002 CGP 6:146796055-146871406

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000982 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity
GO:0004871 IEA signal transducer activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005667 IEA transcription factor complex
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0007165 IEA signal transduction
GO:0007623 IEA circadian rhythm
GO:0042753 IMP positive regulation of circadian rhythm
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046983 IEA protein dimerization activity
GO:0070888 IDA E-box binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261178 ARNTL2-006 protein_coding Homo_sapiens 0 891
ENST00000266503 ARNTL2-001 protein_coding Homo_sapiens 0 928
ENST00000311001 ARNTL2-005 protein_coding Homo_sapiens 0 977
ENST00000395901 ARNTL2-004 protein_coding Homo_sapiens 0 883
ENST00000457040 ARNTL2-008 protein_coding Homo_sapiens 0 959
ENST00000542388 ARNTL2-007 protein_coding Homo_sapiens 0 891
ENST00000544915 ARNTL2-002 protein_coding Homo_sapiens 0 928
ENST00000546179 ARNTL2-003 protein_coding Homo_sapiens 5e-33 147

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