C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trichoplein, keratin filament binding
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112199 Tchp-003 ENSMUSG00000002486 10090 + 5:114714961-114722327 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000112199
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000112199 2.776±1.06 3.456±1.34 4.001±0.31 3.561±0.22 3.573±1.23 1.876±0.58 1.372±0.09 1.565±0.17 1.733±1.04 1.716±0.17 0.483±0.05 2.649±1.25 1.789±0.37 15.144±1.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001JH CIL_0001JH_0003 CGP 5:114669403-114722327
CIL_0001GG CIL_0001GG_0003 CGP 5:114707760-114775517

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005737 ISS cytoplasm
GO:0005739 ISS mitochondrion
GO:0005886 ISS plasma membrane
GO:0006915 ISS apoptotic process
GO:0030308 ISS negative regulation of cell growth
GO:0045095 ISS keratin filament
GO:0045179 ISS apical cortex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000312777 TCHP-003 protein_coding Homo_sapiens 0 747
ENST00000405876 TCHP-001 protein_coding Homo_sapiens 0 747
ENST00000537880 TCHP-005 retained_intron Homo_sapiens 5e-40 171
ENST00000544838 TCHP-006 nonsense_mediated_decay Homo_sapiens 0 747
ENST00000549550 TCHP-008 retained_intron Homo_sapiens 0 420
ENST00000551627 TCHP-009 retained_intron Homo_sapiens 0 424

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