C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: IscU iron-sulfur cluster scaffold homolog (E. coli)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112312 Iscu-003 ENSMUSG00000025825 10090 + 5:113772803-113778273 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonKidneyLiverLungOvaryENSMUST00000112312
Transcript ID Adrenal Breast Colon Kidney Liver Lung Ovary
ENSMUST00000112312 43.537±4.66 6.367±0.58 7.115±1.31 17.428±0.00 7.547±0.00 7.323±0.00 8.776±2.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001M7 CIL_0001M7_0002 CGP 5:113742446-113778288
CIL_0007IZ CIL_0007IZ_0003 CGP 5:113772748-113800516

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005506 IEA iron ion binding
GO:0005739 IDA mitochondrion
GO:0016226 IEA iron-sulfur cluster assembly
GO:0051536 IEA iron-sulfur cluster binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000311893 ISCU-001 protein_coding Homo_sapiens 0 534
ENST00000392807 ISCU-006 protein_coding Homo_sapiens 0 377
ENST00000431221 ISCU-004 protein_coding Homo_sapiens 0 536
ENST00000535405 ISCU-008 retained_intron Homo_sapiens 0 387
ENST00000535729 ISCU-003 protein_coding Homo_sapiens 0 534
ENST00000539580 ISCU-005 nonsense_mediated_decay Homo_sapiens 0 377
ENST00000539593 ISCU-007 protein_coding Homo_sapiens 0 540
ENST00000545932 ISCU-002 retained_intron Homo_sapiens 0 377
ENST00000547005 ISCU-012 protein_coding Homo_sapiens 0 534
ENST00000552072 ISCU-013 retained_intron Homo_sapiens 0 544

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