C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112636 Galnt13-001 ENSMUSG00000060988 10090 + 2:54436317-55118309 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000112636
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000112636 0.002±0.00 0.061±0.03 0.003±0.00 0.399±0.16 0.009±0.00 0.209±0.09 0.005±0.00 0.001±0.00 0.003±0.00 0.426±0.20 0.003±0.00 0.113±0.07 0.010±0.01 0.004±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00075A CIL_00075A_0002 CGP 2:54084093-55118309
CIL_00075B CIL_00075B_0002 CGP 2:54436317-55598145

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004653 IDA polypeptide N-acetylgalactosaminyltransferase activity
GO:0005794 IEA Golgi apparatus
GO:0006493 IDA protein O-linked glycosylation
GO:0016021 IEA integral component of membrane
GO:0030246 IEA carbohydrate binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000392825 GALNT13-001 protein_coding Homo_sapiens 0 2673
ENST00000409237 GALNT13-005 protein_coding Homo_sapiens 0 2194
ENST00000422126 GALNT13-006 protein_coding Homo_sapiens 0 490
ENST00000431076 GALNT13-003 nonsense_mediated_decay Homo_sapiens 0 1592
ENST00000434213 GALNT13-002 protein_coding Homo_sapiens 2e-26 122
ENST00000450838 GALNT13-009 protein_coding Homo_sapiens 0 521
ENST00000453715 GALNT13-004 protein_coding Homo_sapiens 0 364
ENST00000487047 GALNT13-010 processed_transcript Homo_sapiens 0 935
ENST00000489553 GALNT13-008 processed_transcript Homo_sapiens 0 392
ENST00000494805 GALNT13-007 retained_intron Homo_sapiens 0 318

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