C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptoporin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112656 Synpr-002 ENSMUSG00000056296 10090 + 14:13454057-13615459 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000112656
Transcript ID Adipose Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000112656 0.015±0.00 0.017±0.00 8.154±2.29 0.076±0.03 0.047±0.00 0.018±0.00 0.007±0.00 0.079±0.00 0.020±0.00 0.011±0.00 0.054±0.00 0.028±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00078O CIL_00078O_0002 CGP 14:13284780-13683148

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0006810 IEA transport
GO:0030054 IEA cell junction
GO:0030285 IBA integral component of synaptic vesicle membrane
GO:0043005 IEA neuron projection

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295894 SYNPR-004 protein_coding Homo_sapiens 0 1930
ENST00000450542 SYNPR-002 protein_coding Homo_sapiens 0 809
ENST00000460711 SYNPR-007 protein_coding Homo_sapiens 0 1520
ENST00000465156 SYNPR-015 protein_coding Homo_sapiens 0 651
ENST00000468110 SYNPR-003 nonsense_mediated_decay Homo_sapiens 0 905
ENST00000472899 SYNPR-013 protein_coding Homo_sapiens 0 233
ENST00000478300 SYNPR-001 protein_coding Homo_sapiens 0 1524
ENST00000478744 SYNPR-014 processed_transcript Homo_sapiens 0 652
ENST00000479198 SYNPR-006 protein_coding Homo_sapiens 0 893
ENST00000493532 SYNPR-011 processed_transcript Homo_sapiens 0 673
ENST00000498449 SYNPR-005 nonsense_mediated_decay Homo_sapiens 0 863

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