C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rap1 interacting factor 1 homolog (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112693 Rif1-201 ENSMUSG00000036202 10090 + 2:52072837-52122381 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000112693
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000112693 0.320±0.24 0.225±0.00 0.776±0.18 2.019±0.54 0.417±0.37 0.387±0.00 0.246±0.00 0.250±0.07 1.892±1.38 0.502±0.17 0.321±0.06 1.060±0.18 1.044±0.59 1.807±0.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003S5 CIL_0003S5_0003 CGP 2:52038009-52122383
CIL_0003S6 CIL_0003S6_0003 CGP 2:52072837-52338798

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000781 IDA chromosome, telomeric region
GO:0001939 IDA female pronucleus
GO:0001940 IDA male pronucleus
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005886 IEA plasma membrane
GO:0006974 IEA cellular response to DNA damage stimulus
GO:0007049 IEA cell cycle
GO:0019827 IMP stem cell maintenance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000243326 RIF1-001 protein_coding Homo_sapiens 0 3773
ENST00000414861 RIF1-006 protein_coding Homo_sapiens 0 2551
ENST00000428287 RIF1-004 protein_coding Homo_sapiens 0 3794
ENST00000430328 RIF1-007 protein_coding Homo_sapiens 0 3773
ENST00000444746 RIF1-003 protein_coding Homo_sapiens 0 3773
ENST00000453091 RIF1-002 protein_coding Homo_sapiens 0 3773
ENST00000454583 RIF1-008 nonsense_mediated_decay Homo_sapiens 0 1057
ENST00000494333 RIF1-005 processed_transcript Homo_sapiens 0 684
ENST00000498041 RIF1-014 processed_transcript Homo_sapiens 0 309

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