C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor subfamily 6, group A, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112877 Nr6a1-001 ENSMUSG00000063972 10090 - 2:38723370-38927688 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000112877
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000112877 0.829±0.41 0.864±0.60 0.602±0.01 0.658±0.28 0.511±0.29 0.955±0.50 0.138±0.02 0.682±0.19 0.563±0.41 0.858±0.18 0.154±0.00 2.112±0.95 1.852±0.37 23.102±10.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008N3 CIL_0008N3_0002 VISTA 2:38235055-38837083
CIL_00098L CIL_00098L_0002 VISTA 2:38294702-38895720
CIL_00075I CIL_00075I_0002 CGP 2:38692656-38927688
CIL_00075J CIL_00075J_0002 CGP 2:38723370-38963753

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000978 IMP RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IDA DNA binding
GO:0003707 IEA steroid hormone receptor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005667 IDA transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0007276 IEP gamete generation
GO:0007283 IEA spermatogenesis
GO:0008270 IEA zinc ion binding
GO:0030154 IEA cell differentiation
GO:0042803 IDA protein homodimerization activity
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IDA sequence-specific DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000344523 NR6A1-004 protein_coding Homo_sapiens 0 2071
ENST00000373584 NR6A1-003 protein_coding Homo_sapiens 0 2143
ENST00000416460 NR6A1-002 protein_coding Homo_sapiens 0 2119
ENST00000475178 NR6A1-005 protein_coding Homo_sapiens 0 979
ENST00000487099 NR6A1-001 protein_coding Homo_sapiens 0 2398

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