C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM homeobox protein 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112961 Lhx6-001 ENSMUSG00000026890 10090 - 2:36081953-36104060 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000112961
Transcript ID Brain Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000112961 1.776±0.13 0.088±0.00 0.147±0.05 0.125±0.01 0.183±0.09 0.269±0.09 0.903±0.00 0.586±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006N7 CIL_0006N7_0002 CGP 2:36049458-36105408
CIL_0006N8 CIL_0006N8_0002 CGP 2:36081953-36136773

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0021799 IMP cerebral cortex radially oriented cell migration
GO:0021800 IMP cerebral cortex tangential migration
GO:0021853 IMP cerebral cortex GABAergic interneuron migration
GO:0021877 IGI forebrain neuron fate commitment
GO:0021884 IGI forebrain neuron development
GO:0021895 IGI cerebral cortex neuron differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0048469 IMP cell maturation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000340587 LHX6-006 protein_coding Homo_sapiens 0 1386
ENST00000373754 LHX6-003 protein_coding Homo_sapiens 0 1495
ENST00000373755 LHX6-002 protein_coding Homo_sapiens 0 2230
ENST00000394319 LHX6-001 protein_coding Homo_sapiens 0 2121
ENST00000464484 LHX6-005 protein_coding Homo_sapiens 0 239
ENST00000482062 LHX6-004 protein_coding Homo_sapiens 0 800
ENST00000541397 LHX6-009 protein_coding Homo_sapiens 0 1380
ENST00000558672 LHX6-007 retained_intron Homo_sapiens 0 466
ENST00000559529 LHX6-010 processed_transcript Homo_sapiens 4e-24 115
ENST00000559895 LHX6-008 protein_coding Homo_sapiens 0 1552
ENST00000560152 LHX6-012 retained_intron Homo_sapiens 0 667
ENST00000560485 LHX6-011 protein_coding Homo_sapiens 3e-37 159

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