C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM homeobox 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394319 LHX6-001 ENSG00000106852 9606 - 9:122202579-122228845 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartMuscleOvaryTestisENST00000394319
Transcript ID Adipose Adrenal Breast Colon Heart Muscle Ovary Testis
ENST00000394319 4.556±0.00 1.778±0.00 0.501±0.00 2.448±0.00 1.053±0.00 0.080±0.00 0.952±0.24 0.998±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006N7 CIL_0006N7_0001 CGP 9:122159908-122229626
CIL_0006N8 CIL_0006N8_0001 CGP 9:122202577-122264839

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0021799 ISS cerebral cortex radially oriented cell migration
GO:0021800 ISS cerebral cortex tangential migration
GO:0021853 ISS cerebral cortex GABAergic interneuron migration
GO:0021877 IEA forebrain neuron fate commitment
GO:0021884 IEA forebrain neuron development
GO:0021895 IEA cerebral cortex neuron differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0048469 ISS cell maturation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112963 Lhx6-201 protein_coding Mus_musculus 0 2281
ENSMUST00000112960 Lhx6-003 protein_coding Mus_musculus 0 2270
ENSMUST00000112961 Lhx6-001 protein_coding Mus_musculus 0 2121
ENSMUST00000112967 Lhx6-007 protein_coding Mus_musculus 0 1546
ENSMUST00000112966 Lhx6-002 protein_coding Mus_musculus 0 1386
ENSMUST00000148852 Lhx6-006 protein_coding Mus_musculus 0 1380
ENSMUST00000137436 Lhx6-004 processed_transcript Mus_musculus 0 715
ENSMUST00000187180 Lhx6-005 retained_intron Mus_musculus 0 708
ENSMUST00000136821 Lhx6-008 protein_coding Mus_musculus 0 630

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