C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM homeobox 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000541397 LHX6-009 ENSG00000106852 9606 - 9:122202931-122228428 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000541397
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000541397 4.050±0.00 2.522±0.00 0.846±0.00 1.057±0.00 1.716±1.65 0.217±0.00 0.306±0.00 0.103±0.00 0.118±0.00 0.314±0.03 0.448±0.12 1.332±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006N7 CIL_0006N7_0001 CGP 9:122159908-122229626
CIL_0006N8 CIL_0006N8_0001 CGP 9:122202577-122264839

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0021799 ISS cerebral cortex radially oriented cell migration
GO:0021800 ISS cerebral cortex tangential migration
GO:0021853 ISS cerebral cortex GABAergic interneuron migration
GO:0043565 IEA sequence-specific DNA binding
GO:0048469 ISS cell maturation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112967 Lhx6-007 protein_coding Mus_musculus 0 1967
ENSMUST00000112966 Lhx6-002 protein_coding Mus_musculus 0 1967
ENSMUST00000148852 Lhx6-006 protein_coding Mus_musculus 0 1773
ENSMUST00000112963 Lhx6-201 protein_coding Mus_musculus 0 1380
ENSMUST00000112960 Lhx6-003 protein_coding Mus_musculus 0 1380
ENSMUST00000112961 Lhx6-001 protein_coding Mus_musculus 0 1380
ENSMUST00000136821 Lhx6-008 protein_coding Mus_musculus 0 861
ENSMUST00000187180 Lhx6-005 retained_intron Mus_musculus 0 708
ENSMUST00000137436 Lhx6-004 processed_transcript Mus_musculus 0 566

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