C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 41
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113011 Rbm41-002 ENSMUSG00000031433 10090 - X:139943373-139998557 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000113011
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000113011 0.224±0.03 0.461±0.00 0.363±0.08 0.227±0.16 0.309±0.00 0.294±0.06 0.207±0.04 0.559±0.09 0.270±0.12 0.302±0.14 0.353±0.00 0.054±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006AD CIL_0006AD_0002 CGP X:139889511-140062712

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003674 ND molecular_function
GO:0003676 IEA nucleic acid binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000372479 RBM41-002 protein_coding Homo_sapiens 0 846
ENST00000372487 RBM41-001 protein_coding Homo_sapiens 0 835
ENST00000434854 RBM41-008 protein_coding Homo_sapiens 0 830
ENST00000471079 RBM41-004 processed_transcript Homo_sapiens 0 697
ENST00000475556 RBM41-006 processed_transcript Homo_sapiens 0 213
ENST00000485676 RBM41-005 processed_transcript Homo_sapiens 0 553
ENST00000495517 RBM41-003 nonsense_mediated_decay Homo_sapiens 0 1027

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