C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 41
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372479 RBM41-002 ENSG00000089682 9606 - X:107067138-107118804 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastKidneyLiverLungOvaryPlacentaENST00000372479
Transcript ID Adrenal Brain Breast Kidney Liver Lung Ovary Placenta
ENST00000372479 0.458±0.00 0.453±0.00 0.870±0.35 1.177±0.00 1.070±0.29 0.626±0.00 0.384±0.00 0.291±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000173 CIL_000173_0002 CGP X:106900164-107118823
CIL_0006AD CIL_0006AD_0001 CGP X:107064420-107206433

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033810 Rbm41-003 protein_coding Mus_musculus 0 1587
ENSMUST00000113007 Rbm41-001 protein_coding Mus_musculus 0 1539
ENSMUST00000087400 Rbm41-201 protein_coding Mus_musculus 0 1461
ENSMUST00000138635 Rbm41-005 retained_intron Mus_musculus 0 1088
ENSMUST00000135126 Rbm41-006 processed_transcript Mus_musculus 0 865
ENSMUST00000113011 Rbm41-002 protein_coding Mus_musculus 0 846
ENSMUST00000148703 Rbm41-004 retained_intron Mus_musculus 0 701

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