C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: autophagy related 16-like 1 (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113186 Atg16l1-011 ENSMUSG00000026289 10090 + 1:87756076-87792422 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000113186
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000113186 4.141±0.87 4.042±0.00 7.235±1.95 6.628±2.59 3.264±0.44 4.968±1.27 1.701±0.04 5.278±0.79 6.894±2.02 4.527±1.37 1.377±0.35 6.302±2.55 8.784±1.63 1.934±0.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003HZ CIL_0003HZ_0002 CGP 1:87620312-87792428
CIL_0004L2 CIL_0004L2_0003 CGP 1:87755870-87845158

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000045 TAS autophagic vacuole assembly
GO:0000421 IDA autophagic vacuole membrane
GO:0005515 IPI protein binding
GO:0005776 IDA autophagic vacuole
GO:0005930 IDA axoneme
GO:0015031 IEA protein transport
GO:0039689 IMP negative stranded viral RNA replication

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000347464 ATG16L1-201 protein_coding Homo_sapiens 0 1469
ENST00000373525 ATG16L1-004 protein_coding Homo_sapiens 0 965
ENST00000392017 ATG16L1-001 protein_coding Homo_sapiens 0 1266
ENST00000392018 ATG16L1-005 protein_coding Homo_sapiens 0 1266
ENST00000392020 ATG16L1-003 protein_coding Homo_sapiens 0 2207
ENST00000392021 ATG16L1-002 nonsense_mediated_decay Homo_sapiens 0 1266
ENST00000417017 ATG16L1-013 protein_coding Homo_sapiens 0 492
ENST00000419681 ATG16L1-006 protein_coding Homo_sapiens 0 348
ENST00000431917 ATG16L1-012 protein_coding Homo_sapiens 0 327
ENST00000444735 ATG16L1-007 protein_coding Homo_sapiens 0 289
ENST00000464645 ATG16L1-017 processed_transcript Homo_sapiens 0 686
ENST00000472242 ATG16L1-018 retained_intron Homo_sapiens 0 361
ENST00000473865 ATG16L1-019 retained_intron Homo_sapiens 0 592
ENST00000474148 ATG16L1-008 retained_intron Homo_sapiens 0 944
ENST00000479942 ATG16L1-009 retained_intron Homo_sapiens 0 942
ENST00000485623 ATG16L1-014 retained_intron Homo_sapiens 0 490
ENST00000492298 ATG16L1-016 retained_intron Homo_sapiens 0 267
ENST00000498620 ATG16L1-015 processed_transcript Homo_sapiens 0 723

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