C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA methyltransferase 2 homolog B (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372939 TRMT2B-004 ENSG00000188917 9606 - X:101009350-101052054 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainHeartLiverLungPlacentaTestisENST00000372939
Transcript ID Adipose Adrenal Brain Heart Liver Lung Placenta Testis
ENST00000372939 0.623±0.00 2.265±0.00 0.552±0.00 1.033±0.00 0.594±0.00 0.240±0.00 0.844±0.00 0.718±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007AZ CIL_0007AZ_0001 CGP X:100969708-101052116
CIL_0007B0 CIL_0007B0_0001 CGP X:101009346-101096364

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006396 IEA RNA processing
GO:0008033 IEA tRNA processing
GO:0008168 IEA methyltransferase activity
GO:0008173 IEA RNA methyltransferase activity
GO:0030697 IEA S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase activity
GO:0032259 IEA methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113252 Trmt2b-004 protein_coding Mus_musculus 0 1035
ENSMUST00000087541 Trmt2b-001 protein_coding Mus_musculus 0 1035
ENSMUST00000128115 Trmt2b-002 nonsense_mediated_decay Mus_musculus 0 819
ENSMUST00000145066 Trmt2b-003 retained_intron Mus_musculus 0 627
ENSMUST00000087540 Trmt2b-005 protein_coding Mus_musculus 0 259

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