C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: splicing factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113485 Sf1-012 ENSMUSG00000024949 10090 + 19:6363922-6377202 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000113485
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000113485 14.085±1.14 40.571±6.88 18.859±3.51 28.738±7.85 34.249±8.40 18.820±2.45 9.887±2.23 11.886±2.42 8.932±2.45 36.391±5.38 11.577±1.80 27.167±7.73 23.136±8.99 18.106±2.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001YW CIL_0001YW_0002 CGP 19:6363690-6398459

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0030238 IGI male sex determination
GO:0033327 IGI Leydig cell differentiation
GO:0050810 IGI regulation of steroid biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000227503 SF1-002 protein_coding Homo_sapiens 0 1868
ENST00000334944 SF1-001 protein_coding Homo_sapiens 0 2226
ENST00000377387 SF1-006 protein_coding Homo_sapiens 0 1868
ENST00000377390 SF1-005 protein_coding Homo_sapiens 0 3345
ENST00000377394 SF1-004 protein_coding Homo_sapiens 0 1893
ENST00000413725 SF1-019 protein_coding Homo_sapiens 0 1341
ENST00000413951 SF1-011 nonsense_mediated_decay Homo_sapiens 3e-17 95
ENST00000433274 SF1-016 protein_coding Homo_sapiens 0 2676
ENST00000443908 SF1-014 protein_coding Homo_sapiens 0 743
ENST00000448404 SF1-003 nonsense_mediated_decay Homo_sapiens 0 2217
ENST00000463343 SF1-007 retained_intron Homo_sapiens 0 331
ENST00000477596 SF1-015 retained_intron Homo_sapiens 0 505
ENST00000482693 SF1-012 retained_intron Homo_sapiens 0 283
ENST00000486867 SF1-020 protein_coding Homo_sapiens 0 1314
ENST00000489544 SF1-017 processed_transcript Homo_sapiens 0 695

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