C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: splicing factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113487 Sf1-001 ENSMUSG00000024949 10090 + 19:6363922-6377196 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000113487
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000113487 17.176±1.08 44.850±6.06 30.405±5.95 39.196±11.16 46.539±14.94 25.802±5.49 12.353±3.03 18.344±3.14 21.477±9.34 71.181±0.00 15.351±1.62 32.663±6.95 41.278±16.28 25.651±4.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001YW CIL_0001YW_0002 CGP 19:6363690-6398459

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0008270 IEA zinc ion binding
GO:0030238 IGI male sex determination
GO:0033327 IGI Leydig cell differentiation
GO:0050810 IGI regulation of steroid biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000227503 SF1-002 protein_coding Homo_sapiens 0 2850
ENST00000334944 SF1-001 protein_coding Homo_sapiens 0 2344
ENST00000377387 SF1-006 protein_coding Homo_sapiens 0 2713
ENST00000377390 SF1-005 protein_coding Homo_sapiens 0 2344
ENST00000377394 SF1-004 protein_coding Homo_sapiens 0 2832
ENST00000413725 SF1-019 protein_coding Homo_sapiens 0 451
ENST00000413951 SF1-011 nonsense_mediated_decay Homo_sapiens 0 483
ENST00000432725 SF1-018 protein_coding Homo_sapiens 0 364
ENST00000433274 SF1-016 protein_coding Homo_sapiens 0 2207
ENST00000443908 SF1-014 protein_coding Homo_sapiens 0 1090
ENST00000448404 SF1-003 nonsense_mediated_decay Homo_sapiens 0 2374
ENST00000463343 SF1-007 retained_intron Homo_sapiens 0 327
ENST00000477596 SF1-015 retained_intron Homo_sapiens 0 525
ENST00000482693 SF1-012 retained_intron Homo_sapiens 0 422
ENST00000486867 SF1-020 protein_coding Homo_sapiens 0 1088
ENST00000489544 SF1-017 processed_transcript Homo_sapiens 0 695

Loading