C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cellular nucleic acid binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113617 Cnbp-002 ENSMUSG00000030057 10090 - 6:87845098-87851060 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainOvaryPlacentaTestisENSMUST00000113617
Transcript ID Adrenal Brain Ovary Placenta Testis
ENSMUST00000113617 13.321±0.26 78.742±0.00 76.045±45.68 87.886±26.58 27.868±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00007J CIL_00007J_0003 CGP 6:87818447-87851106
CIL_000312 CIL_000312_0002 CGP 6:87842615-87913595

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005634 IDA nucleus
GO:0005783 IDA endoplasmic reticulum
GO:0005829 IDA cytosol
GO:0008270 IEA zinc ion binding
GO:0008284 IDA positive regulation of cell proliferation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000422453 CNBP-001 protein_coding Homo_sapiens 0 649
ENST00000441626 CNBP-009 protein_coding Homo_sapiens 0 621
ENST00000446936 CNBP-011 protein_coding Homo_sapiens 0 490
ENST00000451728 CNBP-010 protein_coding Homo_sapiens 0 634
ENST00000500450 CNBP-004 protein_coding Homo_sapiens 0 414
ENST00000502372 CNBP-006 retained_intron Homo_sapiens 0 331
ENST00000502976 CNBP-002 protein_coding Homo_sapiens 0 518
ENST00000504813 CNBP-003 protein_coding Homo_sapiens 0 414
ENST00000507573 CNBP-005 retained_intron Homo_sapiens 0 200
ENST00000512338 CNBP-008 protein_coding Homo_sapiens 0 220

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