C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cellular nucleic acid binding protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030057 Cnbp 10090 - 6:87842615-87851106 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000032138 Cnbp-201 87842615-87851106 protein_coding
  ENSMUST00000113617 Cnbp-002 87845098-87851060 protein_coding
  ENSMUST00000113619 Cnbp-001 87843082-87851106 protein_coding
  ENSMUST00000134851 Cnbp-003 87844000-87850994 retained_intron
  ENSMUST00000141961 Cnbp-004 87843919-87851027 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032138ENSMUST00000113617ENSMUST00000113619ENSMUST00000141961
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032138 20.000±1.56 16.122±0.20 18.954±0.00 8.851±0.00 N/A 10.590±0.40 12.014±0.00 10.827±1.00 14.923±4.01 15.422±1.71 N/A 20.852±8.19 14.394±5.59 10.232±3.23
ENSMUST00000113617 N/A 13.321±0.26 N/A 78.742±0.00 N/A N/A N/A N/A N/A N/A N/A 76.045±45.68 87.886±26.58 27.868±0.00
ENSMUST00000113619 58.724±4.69 28.077±6.01 94.045±25.42 60.276±14.93 46.638±5.41 34.049±6.77 57.876±15.36 44.675±11.42 84.916±41.90 55.879±3.74 194.037±63.88 74.821±29.67 135.373±45.31 23.989±6.23
ENSMUST00000141961 43.601±3.83 25.676±1.70 N/A 26.223±0.00 35.626±10.14 27.970±8.26 31.807±0.45 44.579±2.89 26.722±5.37 36.739±4.41 N/A N/A N/A 7.338±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00007J CIL_00007J_0003 CGP 6:87818447-87851106
CIL_000312 CIL_000312_0002 CGP 6:87842615-87913595

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003697 IEA single-stranded DNA binding
GO:0003727 IEA single-stranded RNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005783 IDA endoplasmic reticulum
GO:0005829 IDA cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0008284 IDA positive regulation of cell proliferation
GO:0044822 IEA poly(A) RNA binding
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045776 cnbpa CCHC-type zinc finger, nucleic acid binding protein a protein_coding Danio_rerio
ENSDARG00000070922 cnbpb CCHC-type zinc finger, nucleic acid binding protein b protein_coding Danio_rerio
ENSG00000169714 CNBP CCHC-type zinc finger, nucleic acid binding protein protein_coding Homo_sapiens

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