C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CDC42 guanine nucleotide exchange factor (GEF) 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113883 Arhgef9-003 ENSMUSG00000025656 10090 - X:95048939-95166406 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000113883
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000113883 0.600±0.24 0.638±0.00 2.175±0.18 2.823±0.11 0.897±0.42 0.456±0.00 1.033±0.32 0.276±0.11 0.165±0.04 0.866±0.05 0.515±0.00 0.789±0.27 0.071±0.03 0.047±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002RM CIL_0002RM_0002 CGP X:95022510-95196821
CIL_0003JJ CIL_0003JJ_0003 CGP X:95048935-95444872

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005085 TAS guanyl-nucleotide exchange factor activity
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005938 TAS cell cortex
GO:0007264 TAS small GTPase mediated signal transduction
GO:0032321 IEA positive regulation of Rho GTPase activity
GO:0043547 TAS positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000253401 ARHGEF9-001 protein_coding Homo_sapiens 0 3195
ENST00000374870 ARHGEF9-013 protein_coding Homo_sapiens 0 3044
ENST00000374872 ARHGEF9-004 protein_coding Homo_sapiens 0 2331
ENST00000374878 ARHGEF9-002 protein_coding Homo_sapiens 0 2004
ENST00000437457 ARHGEF9-008 protein_coding Homo_sapiens 0 2008
ENST00000466925 ARHGEF9-006 protein_coding Homo_sapiens 0 412
ENST00000495564 ARHGEF9-003 nonsense_mediated_decay Homo_sapiens 0 1171
ENST00000498761 ARHGEF9-005 retained_intron Homo_sapiens 0 412
ENST00000623417 ARHGEF9-019 protein_coding Homo_sapiens 0 652
ENST00000623517 ARHGEF9-007 protein_coding Homo_sapiens 0 2071
ENST00000623566 ARHGEF9-016 protein_coding Homo_sapiens 0 726
ENST00000623951 ARHGEF9-015 processed_transcript Homo_sapiens 0 798
ENST00000624210 ARHGEF9-014 protein_coding Homo_sapiens 0 2398
ENST00000624355 ARHGEF9-009 protein_coding Homo_sapiens 0 649
ENST00000624387 ARHGEF9-018 processed_transcript Homo_sapiens 0 601
ENST00000624538 ARHGEF9-017 protein_coding Homo_sapiens 0 1055
ENST00000624783 ARHGEF9-020 processed_transcript Homo_sapiens 0 732
ENST00000624843 ARHGEF9-010 protein_coding Homo_sapiens 0 2002
ENST00000625116 ARHGEF9-011 protein_coding Homo_sapiens 0 643

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