C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: makorin, ring finger protein, 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114822 Mkrn1-002 ENSMUSG00000029922 10090 - 6:39405539-39420298 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalHeartLiverMusclePlacentaENSMUST00000114822
Transcript ID Adrenal Heart Liver Muscle Placenta
ENSMUST00000114822 8.869±0.79 5.086±0.00 54.498±5.25 2.107±0.18 24.085±9.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZU CIL_0008ZU_0002 VISTA 6:38939568-39543498
CIL_000305 CIL_000305_0002 CGP 6:39381175-39420462

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003682 IDA chromatin binding
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255977 MKRN1-001 protein_coding Homo_sapiens 0 728
ENST00000443720 MKRN1-002 protein_coding Homo_sapiens 0 728
ENST00000445872 RP11-535M15.2-001 transcribed_processed_pseudogene Homo_sapiens 0 411
ENST00000467513 MKRN1-013 protein_coding Homo_sapiens 0 436
ENST00000471104 MKRN1-011 protein_coding Homo_sapiens 0 435
ENST00000474576 MKRN1-007 protein_coding Homo_sapiens 0 435
ENST00000475010 MKRN1-006 retained_intron Homo_sapiens 0 686
ENST00000481705 MKRN1-009 processed_transcript Homo_sapiens 0 466
ENST00000494939 MKRN1-014 protein_coding Homo_sapiens 0 435
ENST00000495305 MKRN1-003 nonsense_mediated_decay Homo_sapiens 0 464
ENST00000496169 MKRN1-005 nonsense_mediated_decay Homo_sapiens 0 438
ENST00000498535 MKRN1-010 nonsense_mediated_decay Homo_sapiens 0 292

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