C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AT rich interactive domain 5A (MRF1-like)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115032 Arid5a-002 ENSMUSG00000037447 10090 + 1:36307754-36322988 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000115032
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000115032 0.986±0.26 0.296±0.07 0.765±0.07 0.069±0.00 3.710±0.70 0.855±0.28 0.334±0.15 0.305±0.11 0.232±0.12 1.718±0.21 0.415±0.20 1.359±0.45 0.253±0.05 0.334±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00070A CIL_00070A_0002 CGP 1:36264597-36324029
CIL_0003NZ CIL_0003NZ_0002 CGP 1:36307733-36369181

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002062 IDA chondrocyte differentiation
GO:0003677 IEA DNA binding
GO:0003682 IDA chromatin binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005667 IPI transcription factor complex
GO:0005730 IEA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0008134 IPI transcription factor binding
GO:0035066 IDA positive regulation of histone acetylation
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000357485 ARID5A-001 protein_coding Homo_sapiens 0 1299
ENST00000412735 ARID5A-002 nonsense_mediated_decay Homo_sapiens 0 1129
ENST00000454558 ARID5A-004 protein_coding Homo_sapiens 0 1299
ENST00000467498 ARID5A-007 retained_intron Homo_sapiens 3e-18 97
ENST00000470579 ARID5A-006 retained_intron Homo_sapiens 0 267
ENST00000497920 ARID5A-005 retained_intron Homo_sapiens 0 1038

Loading