C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptojanin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115789 Synj2-007 ENSMUSG00000023805 10090 + 17:5987986-6039341 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalColonLiverOvaryPlacentaTestisENSMUST00000115789
Transcript ID Adipose Adrenal Colon Liver Ovary Placenta Testis
ENSMUST00000115789 1.738±0.00 0.968±0.00 2.080±0.15 0.655±0.22 1.839±0.66 1.254±0.21 2.321±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00055D CIL_00055D_0002 CGP 17:5841328-6044290
CIL_00055M CIL_00055M_0002 CGP 17:5941280-6079741

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0004439 IDA phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity
GO:0005737 IEA cytoplasm
GO:0016020 IEA membrane
GO:0046856 IEA phosphatidylinositol dephosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355585 SYNJ2-002 protein_coding Homo_sapiens 0 3007
ENST00000367112 SYNJ2-003 protein_coding Homo_sapiens 0 595
ENST00000367122 SYNJ2-201 protein_coding Homo_sapiens 0 1354
ENST00000485863 SYNJ2-001 nonsense_mediated_decay Homo_sapiens 0 525

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