C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptojanin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115790 Synj2-006 ENSMUSG00000023805 10090 + 17:5975740-6038555 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000115790
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000115790 1.253±0.26 0.566±0.00 4.227±0.00 1.374±0.58 2.294±0.46 3.671±0.95 0.442±0.00 0.347±0.00 1.642±0.47 1.991±0.42 2.734±1.05 3.114±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00055D CIL_00055D_0002 CGP 17:5841328-6044290
CIL_00055M CIL_00055M_0002 CGP 17:5941280-6079741

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0004439 IDA phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity
GO:0046856 IEA phosphatidylinositol dephosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355585 SYNJ2-002 protein_coding Homo_sapiens 0 3916
ENST00000367112 SYNJ2-003 protein_coding Homo_sapiens 0 1157
ENST00000367122 SYNJ2-201 protein_coding Homo_sapiens 0 1916
ENST00000485863 SYNJ2-001 nonsense_mediated_decay Homo_sapiens 0 525

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