C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptojanin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115791 Synj2-201 ENSMUSG00000023805 10090 + 17:5941280-6038555 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungOvaryPlacentaENSMUST00000115791
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENSMUST00000115791 2.046±1.15 1.744±0.37 3.527±0.97 1.855±0.32 4.920±0.70 1.760±0.09 0.471±0.02 0.586±0.19 1.611±0.37 2.751±1.13 1.455±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00055D CIL_00055D_0002 CGP 17:5841328-6044290
CIL_00055M CIL_00055M_0002 CGP 17:5941280-6079741

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0004439 IDA phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity
GO:0005515 IEA protein binding
GO:0046856 IEA phosphatidylinositol dephosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355585 SYNJ2-002 protein_coding Homo_sapiens 0 4034
ENST00000367112 SYNJ2-003 protein_coding Homo_sapiens 0 1157
ENST00000367122 SYNJ2-201 protein_coding Homo_sapiens 0 1916
ENST00000485863 SYNJ2-001 nonsense_mediated_decay Homo_sapiens 0 525

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