C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006EO_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000170558-ENSG00000134762 CGP 9606 18:27950966-31042815
GeneTranscriptPositionBiotype
ENSG00000134762 (DSC3)
desmocollin 3 		ENST00000360428 (DSC3-001) 30990008-31042741 protein_coding
ENST00000434452 (DSC3-201) 30990086-31042815 protein_coding
ENST00000584980 (DSC3-002) 30994126-31006918 protein_coding
ENSG00000170558 (CDH2)
cadherin 2, type 1, N-cadherin (neuronal) 		ENST00000269141 (CDH2-001) 27950966-28177446 protein_coding
ENST00000399380 (CDH2-003) 27951081-28036585 protein_coding
ENST00000413878 (CDH2-004) 28011918-28159297 protein_coding
ENST00000418492 (CDH2-002) 28005970-28045596 protein_coding
ENST00000430882 (CDH2-005) 28009804-28097229 protein_coding
ENSG00000265980 (CTD-2515C13.2)
 ENST00000577674 (CTD-2515C13.2-001) 29278509-29361963 lincRNA
ENSG00000265994 (RP11-510D21.1)
 ENST00000582726 (RP11-510D21.1-001) 28785068-28789260 lincRNA
ENSG00000266196 (RP11-675P14.1)
 ENST00000583089 (RP11-675P14.1-001) 30713275-30714286 lincRNA
ENSG00000266296 (ARIH2P1)
ariadne homolog 2 pseudogene 1 		ENST00000584680 (ARIH2P1-001) 28651732-28653208 processed_pseudogene
ENSG00000266479 (CTD-2515C13.1)
 ENST00000581934 (CTD-2515C13.1-001) 29256817-29257060 processed_pseudogene
ENSG00000274578 (RP11-430E17.1)
 ENST00000621223 (RP11-430E17.1-001) 28146233-28146703 sense_intronic
ENSG00000279734 (RP11-675P14.2)
 ENST00000624521 (RP11-675P14.2-001) 30780006-30780424 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_0006EO_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024304-ENSMUSG00000059898 CGP 10090 18:16588877-20002097
GeneTranscriptPositionBiotype
ENSMUSG00000024304 (Cdh2)
cadherin 2 		ENSMUST00000025166 (Cdh2-001) 16588877-16809246 protein_coding
ENSMUST00000115850 (Cdh2-003) 16589023-16670069 protein_coding
ENSMUST00000152779 (Cdh2-002) 16771397-16808462 retained_intron
ENSMUSG00000059898 (Dsc3)
desmocollin 3 		ENSMUST00000115848 (Dsc3-201) 19960930-20002097 protein_coding
ENSMUSG00000082608 (Gm7670)
predicted gene 7670 		ENSMUST00000121272 (Gm7670-001) 16839317-16839957 processed_pseudogene
ENSMUSG00000085575 (Gm15485)
predicted gene 15485 		ENSMUST00000149095 (Gm15485-001) 16728733-16729678 antisense
ENSMUSG00000086095 (Gm15328)
predicted gene 15328 		ENSMUST00000144006 (Gm15328-001) 16816407-16822783 lincRNA
ENSMUSG00000087170 (1700001G01Rik)
RIKEN cDNA 1700001G01 gene 		ENSMUST00000125117 (1700001G01Rik-001) 17035508-17137559 lincRNA
ENSMUST00000136956 (1700001G01Rik-004) 17125787-17137514 lincRNA
ENSMUST00000147119 (1700001G01Rik-003) 17019051-17137559 lincRNA
ENSMUST00000153022 (1700001G01Rik-002) 17019076-17047568 lincRNA
ENSMUSG00000093274 (Gm26235)
predicted gene, 26235 		ENSMUST00000175533 (Gm26235-201) 18099560-18099660 miRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006EO_0001ENSG00000134762ENST00000360428ENST00000434452ENST00000584980ENSG00000170558ENST00000269141ENST00000399380ENST00000413878ENST00000418492ENST00000430882ENSG00000265980ENST00000577674ENSG00000265994ENST00000582726ENSG00000266196ENST00000583089ENSG00000266296ENST00000584680ENSG00000266479ENST00000581934ENSG00000274578ENST00000621223ENSG00000279734ENST00000624521CIL_0006EO_0002ENSMUSG00000024304ENSMUST00000025166ENSMUST00000115850ENSMUST00000152779ENSMUSG00000059898ENSMUST00000115848ENSMUSG00000082608ENSMUST00000121272ENSMUSG00000085575ENSMUST00000149095ENSMUSG00000086095ENSMUST00000144006ENSMUSG00000087170ENSMUST00000125117ENSMUST00000136956ENSMUST00000147119ENSMUST00000153022ENSMUSG00000093274ENSMUST00000175533
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006EO_0001ENSG00000134762ENST00000360428ENST00000434452ENST00000584980ENSG00000170558ENST00000269141ENST00000399380ENST00000413878ENSG00000265980ENST00000577674ENSG00000265994ENST00000582726ENSG00000266196ENST00000583089ENSG00000266296ENST00000584680ENSG00000266479ENST00000581934ENSG00000274578ENST00000621223ENSG00000279734ENST00000624521CIL_0006EO_0002ENSMUSG00000024304ENSMUST00000025166ENSMUST00000115850ENSMUSG00000059898ENSMUST00000115848ENSMUSG00000082608ENSMUST00000121272ENSMUSG00000085575ENSMUST00000149095ENSMUSG00000086095ENSMUST00000144006ENSMUSG00000087170ENSMUST00000125117ENSMUST00000136956ENSMUST00000147119ENSMUST00000153022ENSMUSG00000093274ENSMUST00000175533
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000134762 ENST00000360428 N/A N/A N/A 0.015±0.00 0.966±0.22 0.253±0.00 0.057±0.04 0.046±0.00 N/A N/A 0.003±0.00 0.893±0.56 3.930±1.19 0.121±0.00
ENST00000434452 0.466±0.00 0.037±0.00 0.032±0.00 0.024±0.00 0.520±0.25 N/A 0.019±0.00 0.073±0.05 0.402±0.39 0.259±0.02 0.002±0.00 1.045±0.63 3.318±2.18 0.292±0.26
ENST00000584980 N/A N/A 0.079±0.00 N/A N/A 0.303±0.00 0.049±0.00 0.232±0.00 N/A 0.245±0.00 N/A N/A N/A N/A
ENSG00000170558 ENST00000269141 0.103±0.00 N/A 1.598±0.00 8.187±1.15 0.042±0.00 2.370±0.00 49.755±35.79 5.074±0.13 3.440±2.97 0.372±0.00 N/A 2.600±0.59 0.169±0.00 7.074±4.27
ENST00000399380 0.030±0.00 0.479±0.00 1.341±0.00 3.714±0.00 0.602±0.00 0.403±0.00 5.031±0.00 5.647±0.00 N/A 0.076±0.00 0.056±0.00 1.320±1.20 0.261±0.19 6.998±3.83
ENST00000413878 N/A N/A N/A N/A 1.379±0.00 1.129±0.00 N/A N/A 1.507±0.00 N/A N/A N/A N/A N/A
ENST00000418492 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430882 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000265980 ENST00000577674 N/A 0.121±0.00 N/A N/A 0.030±0.00 0.055±0.00 0.028±0.00 N/A N/A 0.028±0.00 N/A N/A N/A N/A
ENSG00000265994 ENST00000582726 N/A N/A N/A N/A N/A N/A N/A N/A 0.167±0.00 N/A N/A N/A N/A N/A
ENSG00000266196 ENST00000583089 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.029±0.00
ENSG00000266296 ENST00000584680 N/A N/A N/A 0.021±0.00 0.010±0.00 0.009±0.00 N/A N/A N/A N/A N/A N/A N/A 0.040±0.03
ENSG00000266479 ENST00000581934 N/A 0.071±0.00 N/A 0.072±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000274578 ENST00000621223 N/A N/A 1.711±0.00 1.695±1.56 N/A N/A 3.045±2.56 5.736±0.00 N/A 0.162±0.00 N/A 0.948±1.21 N/A 0.107±0.00
ENSG00000279734 ENST00000624521 0.140±0.00 0.318±0.00 1.470±0.00 0.342±0.05 0.796±0.75 0.437±0.35 0.366±0.22 0.362±0.01 1.287±1.22 0.907±0.72 0.180±0.16 0.685±0.49 0.781±0.39 2.236±1.89
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024304 ENSMUST00000025166 0.965±0.34 9.891±1.52 1.278±0.12 21.209±7.41 1.404±0.34 0.557±0.19 15.100±0.58 0.658±0.18 4.686±1.53 1.082±0.14 0.118±0.07 7.774±3.24 0.581±0.27 1.875±0.19
ENSMUST00000115850 2.542±1.37 10.622±4.83 1.630±0.52 28.198±8.82 1.625±0.65 1.093±0.24 27.695±11.96 1.552±0.56 16.595±7.52 2.090±0.16 0.176±0.10 5.965±2.07 0.745±0.20 6.733±4.55
ENSMUST00000152779 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000059898 ENSMUST00000115848 0.015±0.01 N/A 0.008±0.01 0.195±0.06 2.151±0.40 0.045±0.03 0.007±0.00 0.229±0.13 0.022±0.02 1.183±0.83 0.199±0.10 0.038±0.02 0.107±0.10 0.014±0.01
ENSMUSG00000082608 ENSMUST00000121272 0.067±0.00 N/A N/A 0.015±0.00 N/A N/A N/A 0.171±0.00 N/A N/A N/A 0.073±0.00 N/A N/A
ENSMUSG00000085575 ENSMUST00000149095 N/A N/A N/A N/A N/A N/A N/A N/A 0.085±0.00 N/A N/A N/A N/A 0.663±0.22
ENSMUSG00000086095 ENSMUST00000144006 0.022±0.00 0.170±0.09 0.013±0.01 0.163±0.00 0.113±0.07 N/A 0.391±0.15 0.015±0.00 0.099±0.08 N/A N/A 0.162±0.15 0.016±0.00 0.135±0.00
ENSMUSG00000087170 ENSMUST00000125117 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.706±0.99
ENSMUST00000136956 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.471±0.00
ENSMUST00000147119 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.778±0.00
ENSMUST00000153022 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.959±3.46
ENSMUSG00000093274 ENSMUST00000175533 N/A N/A 32.385±0.00 13.407±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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