C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AT rich interactive domain 5A (MRF1-like)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000116629 Arid5a-005 ENSMUSG00000037447 10090 + 1:36307754-36320528 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000116629
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000116629 2.788±0.32 1.570±0.27 1.580±0.13 1.138±0.66 11.888±2.68 2.301±0.21 0.750±0.21 0.883±0.13 0.742±0.26 3.323±0.96 0.872±0.28 3.289±1.39 0.960±0.32 0.432±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00070A CIL_00070A_0002 CGP 1:36264597-36324029
CIL_0003NZ CIL_0003NZ_0002 CGP 1:36307733-36369181

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002062 IDA chondrocyte differentiation
GO:0003682 IDA chromatin binding
GO:0005634 IDA nucleus
GO:0005667 IPI transcription factor complex
GO:0008134 IPI transcription factor binding
GO:0035066 IDA positive regulation of histone acetylation
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000357485 ARID5A-001 protein_coding Homo_sapiens 0 1131
ENST00000412735 ARID5A-002 nonsense_mediated_decay Homo_sapiens 0 1155
ENST00000454558 ARID5A-004 protein_coding Homo_sapiens 0 1131
ENST00000467498 ARID5A-007 retained_intron Homo_sapiens 2e-25 121
ENST00000470579 ARID5A-006 retained_intron Homo_sapiens 3e-18 97
ENST00000497920 ARID5A-005 retained_intron Homo_sapiens 0 1038

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