C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptotagmin VI
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117221 Syt6-005 ENSMUSG00000027849 10090 + 3:103576126-103635178 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonLungOvaryENSMUST00000117221
Transcript ID Adipose Bladder Brain Breast Colon Lung Ovary
ENSMUST00000117221 0.080±0.00 0.008±0.00 2.854±1.39 0.036±0.00 0.422±0.14 0.221±0.09 0.222±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006X0 CIL_0006X0_0002 CGP 3:103575231-103738001

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005515 IPI protein binding
GO:0005829 IDA cytosol
GO:0005886 IEA plasma membrane
GO:0007340 IDA acrosome reaction
GO:0008021 IEA synaptic vesicle
GO:0016021 IEA:IDA integral component of membrane
GO:0019898 IDA extrinsic component of membrane
GO:0030054 IEA cell junction
GO:0042802 IPI identical protein binding
GO:0042803 IDA protein homodimerization activity
GO:0046872 IEA metal ion binding
GO:0046982 IPI protein heterodimerization activity
GO:0048306 IPI calcium-dependent protein binding
GO:0097038 IDA perinuclear endoplasmic reticulum

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000369547 SYT6-201 protein_coding Homo_sapiens 0 2311
ENST00000607941 SYT6-001 protein_coding Homo_sapiens 0 2309
ENST00000608203 SYT6-006 protein_coding Homo_sapiens 0 850
ENST00000608879 SYT6-008 protein_coding Homo_sapiens 0 207
ENST00000609117 SYT6-007 protein_coding Homo_sapiens 0 2501
ENST00000610096 SYT6-002 nonsense_mediated_decay Homo_sapiens 0 2017
ENST00000610121 SYT6-003 nonsense_mediated_decay Homo_sapiens 0 1668
ENST00000610222 SYT6-004 protein_coding Homo_sapiens 0 1735

Loading