C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117588 Hfm1-001 ENSMUSG00000043410 10090 - 5:106840194-106926321 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainHeartLiverOvaryPlacentaTestisENSMUST00000117588
Transcript ID Adipose Bladder Brain Heart Liver Ovary Placenta Testis
ENSMUST00000117588 0.009±0.00 0.006±0.00 1.305±1.27 0.009±0.00 0.009±0.00 0.018±0.00 0.007±0.00 1.472±0.99

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000906 CIL_000906_0002 VISTA 5:106264330-106866018
CIL_000699 CIL_000699_0002 CGP 5:106616739-106926321
CIL_00069J CIL_00069J_0002 CGP 5:106840192-106984432

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000712 IMP resolution of meiotic recombination intermediates
GO:0003674 ND molecular_function
GO:0003676 IEA nucleic acid binding
GO:0004386 IEA helicase activity
GO:0005524 IEA ATP binding
GO:0005575 ND cellular_component

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000370425 HFM1-002 protein_coding Homo_sapiens 0 3932
ENST00000430465 HFM1-008 protein_coding Homo_sapiens 0 1062
ENST00000462405 HFM1-009 processed_transcript Homo_sapiens 0 1703
ENST00000481900 HFM1-001 retained_intron Homo_sapiens 0 1192
ENST00000488023 HFM1-003 retained_intron Homo_sapiens 0 1205
ENST00000497520 HFM1-004 processed_transcript Homo_sapiens 0 213

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